Growing vegetables
Mahla Ghasemi; Somayeh Sardouei-Nasab; Ghasem Mohammadi- Nejad; Somayeh Aminizadeh
Abstract
Introduction
Onion stands as one of the primary and extensively consumed vegetables at global scale, with numerous genotypes, both native and imported, being cultivated in the country annually. The southern provinces of the country have allocated about 50 percent of the cultivated area to onion cultivation. ...
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Introduction
Onion stands as one of the primary and extensively consumed vegetables at global scale, with numerous genotypes, both native and imported, being cultivated in the country annually. The southern provinces of the country have allocated about 50 percent of the cultivated area to onion cultivation. Therefore, selecting superior genotypes compatible with southern regions is essential to achieve maximum yield. Considering the long history of onion cultivation as one of the native plants of our country, there is a lot of genetic diversity in this plant. However, to date, inadequate breeding programs have been conducted to develop new, high-yield varieties in our country, leading most farmers to rely on local cultivars for cultivation. Therefore, it is necessary to design targeted breeding programs to produce new varieties superior in yield potential, flavor, aroma, resistance to pests and diseases, and other characteristics. In this regard, collecting diverse onion germplasm and evaluating genetic diversity in it is one of the basic steps for designing targeted breeding. The main purpose of this project is to evaluate genetic diversity in yellow and white onion cultivars in terms of morphological traits and selecting superior genotypes. The results of this project are a necessary prerequisite for long-term plans for the production of new varieties of onions.
Materials and Methods
The research was carried out in the Faryab region, situated in the southern part of Kerman province. We assessed four commercial yellow onion hybrids- Rio Bravo, Soberana, Eiden, and Ascro Goldeneye -and four commercial white onion hybrids-Minerva, Cirrus, Macran, and 4043-using a 4x4 Latin square design during the 2022 growing season. Various observable traits, such as days to bulbing, days to maturity, onion bulb diameter, plant height and leaf length, fresh and dry plant weight, number of edible layers, fusarium infection percentage, and average tuber yield were recorded. To analyze the data, we used descriptive statistics to show the maximum, minimum, and average values of the traits, along with variance analysis, correlation analysis, and mean comparisons.
Results and Discussion
The analysis of variance revealed significant variations across the measured traits. Within the yellow onion genotypes, Rio Bravo displayed the shortest maturity cycle, averaging 113 days to maturity, while Aiden exhibited the longest maturity duration with an average of 141 days. The Sobrana cultivar consistently outperformed other varieties across all investigated traits and was introduced as the best yellow onion cultivar. Bulb yield displayed strong and positive correlations with bulb diameter, bulb length, plant height, leaf length, number of edible layers, and both fresh and dry plant weight. However, the correlation between days to maturity and bulb yield was low, suggesting that the duration from planting to maturity did not affect the enhancement of bulb yield in yellow onions. The findings indicated that in contrast to yellow onion cultivars, white onion cultivars exhibited a longer average duration to bulb formation and maturity, alongside a lower bulb yield. Among the white onion genotypes, Minerva displayed the earliest maturity, while Cirrus was observed as the longest maturing genotype. Cirrus cultivar exhibited the highest average bulb diameter, bulb length, plant fresh weight, plant dry weight, leaf length, and bulb yield. Conversely, the Macran genotype displayed the lowest mean values for bulb diameter, bulb length, plant fresh weight, plant dry weight, and bulb yield. Additionally, a significant and strong positive relationship was observed among bulb diameter, bulb length, plant fresh weight, and plant dry weight. Typically, onion quality is often assessed based on bulb diameter, where larger bulb diameters tend to correspond with higher bulb yields. Evidently, both in yellow and white onion cultivars, those with higher yields also demonstrated larger bulb diameters.
Conclusion
In the southern regions of Kerman province, the early maturity of onions is very important. Among the yellow onion genotypes, Rio Bravo was the earliest variety. The Soberana cultivar had a higher bulb yield compared to Rio Bravo, but it matured approximately twenty days later than Rio Bravo. Among the white varieties, Minerva was also the earliest maturing variety. However, the Cirrus cultivar had a higher bulb yield compared to Minerva. Yet, in comparison to Minerva, it was both later to mature and more susceptible to fusarium. The selection of onion varieties can significantly depend on the specific conditions of the region and the needs of the farmers. If timing and fusarium sensitivity are crucial factors for farmers, Minerva and Rio Bravo, with lower susceptibility to fusarium, might be suitable options. However, if bulb yield and product quality hold greater importance for farmers, Soberana among yellow onions and Cirrus among white onions are recommended. Additionally, considering breeding goals, these varieties can be utilized in onion breeding programs according to breeding objectives.
Growing vegetables
Sasan Golcheshmeh; Ghaffar Kiani; Seyyed Kamal Kazemitabar; Saeid Navabpour
Abstract
Introduction
Tomato is a product with a wide range of genotypes with different yields and selection based on this trait and its components can accelerate the breeding programs of this plant. The most important goals of tomato breeders have been to increase yield, disease resistance, early maturity, ...
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Introduction
Tomato is a product with a wide range of genotypes with different yields and selection based on this trait and its components can accelerate the breeding programs of this plant. The most important goals of tomato breeders have been to increase yield, disease resistance, early maturity, and improve the quality characteristics of the fruit. Therefore, awareness of genetic diversity in the population is an important step in plant breeding, and to achieve this goal, the studied genotypes must first be identified in terms of genetic potential and favorable agronomic traits. The usual approach for describing and evaluating populations requires cultivating sample populations and evaluating their morphological and agronomic characteristics. In this regard, multivariate statistical methods play an important role in studying genetic diversity and selecting appropriate parents. Unfortunately, the tomato cultivars used in Iran are often not at the favorable level in terms of important traits such as the number of days to fruit ripening, fruit weight, fruit yield, fruit length, and width, and few studies have been done on these traits. Therefore, this study was conducted to investigate the morphological diversity, evaluate the yield and its components among some imported tomato lines using analysis of variance, cluster analysis, and principal component analysis.
Materials and Methods
This study was performed in Sari University of Agricultural Sciences and Natural Resources, Mazandaran, Iran in 2020. The plant material included 24 tomato lines imported from the Canadian Plant Gene Bank and one check variety. The experimental design used for morphological analysis was a randomized complete block design with three replications. Evaluated characteristics were included of the number of days to first flowering, number of days from germination to first fruit coloring (early ripening), plant height (cm), number of fruits per plant, average fruit weight per plant (g), plant yield (g), length and width of the fruit (cm). After measuring the characteristics at the farm and recording the data, analysis of variance was performed to examine the diversity between lines in terms of the studied variables, and Duncan test was used to compare the means and SAS software was used to test the correlation coefficients of the variables. Cluster analysis for grouping of tomato lines was performed based on the mean of the main data of standardized traits, which was determined by Euclidean distance to determine the distance between the lines, and the UPGMA method was used to merge the clusters. Principal component analysis was performed based on the mean of the main data of morphological traits.
Results and Discussion
The results of the analysis of variance showed that there was a significant difference between all lines in terms of the studied characters. Also, principal component analysis based on morphological traits showed that the first two main components accounted for 75% of the total phenotypic variation in the data and the number of days from germination to first fruit coloring (-0.606), the number of days to first flowering (-0.516), fruit weight per plant (0.492), fruit width (0.480), fruit length (0.472), plant height (-0.445), fruit yield per plant (0.395) and the number of fruits per plant (-0.367) had the highest contribution in yield changes. Therefore, these variables might be taken into consideration for effective selection of parents for hybridization programs for broadening the genetic base in the population as well as to develop elite lines or F1 hybrids. UPGMA cluster analysis also divided the studied lines into nine groups. Group IX lines were in good condition in terms of yield traits and components, group VIII lines in terms of maturity and flowering, and group IV lines in terms of fruit number per plant. And the lines in groups I and V were in moderate condition for all traits. According to these results, the cross of the lines in the more distant groups can produce hybrids with high diversity and maximum heterosis.
Conclusion
According to the main purpose of this study, which was to evaluate the yield and its components and according to the analysis performed, lines 8, 11, and 17 due to showing the least number of days to flowering and early, lines 10 and 14 due to having the highest yield, the highest fruit weight, and highest fruit length and width and lines 2, 9, 15, 21, and 24 due to having the highest number of fruits per plant and the favorable height are also recommended for use in tomato breeding programs.
Ebrahim Ganji Moghadam; Hamid Rahnemoun; Mahboobeh Zamani pour
Abstract
Introduction: Iran is the fourth largest apricot producer in the world. It is important to know the level of genetic diversity in breeding programs. Local genotypes are important because they are environmentally friendly and have beneficial genes in breeding programs. Therefore, this study was conducted ...
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Introduction: Iran is the fourth largest apricot producer in the world. It is important to know the level of genetic diversity in breeding programs. Local genotypes are important because they are environmentally friendly and have beneficial genes in breeding programs. Therefore, this study was conducted with the main purpose to investigate the characteristics of phenology, morphology and pomology of six promising apricot genotypes in order to determine the best genotypes in Khorasan Razavi Province condition. Materials and Methods: This study was conducted to evaluate characteristics of six selected genotypes (‘190’, ‘269’, ‘414’, ‘464’, ‘390’ and ‘177’) compared to ‘Ordubad-90’ (as a control) with the aim of assessing their compatibility in Khorasan Razavi climatic conditions in a randomized complete block design with three replications, at Golmakan Research Station during the 2017-2019. These genotypes were selected randomly from the Azerbaijan apricot populations around 15 years ago and were undergoing preliminary studies in the main habitat and collecting and experimental orchards. During the research period, all genotypes were completely uniform in terms of environmental conditions and garden management. Quantitative analysis of variance was performed using SPSS software and comparison of means using Duncan's multiple range test at a probability level of 1%. Results and Discussion: Results showed that significant differences between genotypes in terms of flowering dates and fruit ripening. So that, Genotypes of ‘269’ were the earliest (19 March) and ‘190’ were the most late flowering (27 March) and, in the terms of fruit ripening time, genotype of ‘177’ were the earliest (third decade of May) and genotype of ‘190’ were the most late (second decade of July). Also, genotype of ‘414’ had the highest height (302.57 cm), crown width (278.03 cm), trunk cross section (42.75 cm2), annual vegetative growth (58.98 cm) and size index (8.76 m). These results are consistent with the findings of Nejatian and Arzani (2002) and Mesbahi et al. (2014) on a relatively significant diversity in the morphological characteristics of the studied genotypes. There was direct correlation between fruit size and stone size, so that, the highest fruit weight (65 g), stone weight (3.49 g) and kernel weight (1.93 g) was in genotype of ‘414’. This result is agreement with Asma and Ozturk (2005) who reported that there are direct correlation among fruit weight, stone weight and kernel weight in the studied apricot genotypes in Turkey. The highest acidity content (0.67%) belonged to genotype of ‘177’, the highest pH (4.97) was in genotype of ‘390’ and the highest yield (20.66 kg) was in genotype of ‘190’. The obtained results are consistent with the results of Rahnemoon et al. (2005) on the existence of a significant difference between the mean percentage of sugar and the content of total organic acids. Accordingly, with the increase of soluble solids during fruit ripening, the amount of total acid decreased, which is consistent with the results of Asma and Ozturk (2005). Also, there was a significant negative correlation between flowering time and yield at the level of 1% (-0.704). These results are consistent with the findings of Piir et al. (2017). The results of principal component analysis showed that PC1 factor with 47.06% of the total changes indicates fruit weight, stone weight and core weight, which can be called the factor of pomological traits. PC2 factor with 19.63% of the total changes indicates height, crown width and trunk cross section, which can be called the factor of morphological traits. PC3 factor with 15.14% of the total changes indicates the chemical properties of the fruit. The PC4 factor with 7.62% of the total changes indicates the time of beginning of flowering, the number of days from the full blooming stage to fruit ripening and yield, which can be called the factor of phenological traits. These four combinations accounted for about 89.45% of the total variation, and the other variations included a slight variation. These results are comparable to the results of Janatizadeh et al. (2011) regarding cultivars in Shahroud city. Conclusion: Genotype of ‘177’ is recommended because of its early ripening. Also, genotype of ‘144’ due to large fruit size, genotype of ‘190’ due to late ripening and high yield compared to ‘Ordubad-90’ (control) are recommended.
Mohammad Hossein Alemkhoumaram; Amir Hossein Keshtkar; Asghar Mirzaie Asl
Abstract
Introduction: Garlic is native to central Asia, with a three thousand years history of human consumption and use. Global consumption has increased fourfold during the 24-years period from 1989 to 2013. Area under garlic cultivation, average yield/ha and total production of the world were 1,468,811 ha, ...
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Introduction: Garlic is native to central Asia, with a three thousand years history of human consumption and use. Global consumption has increased fourfold during the 24-years period from 1989 to 2013. Area under garlic cultivation, average yield/ha and total production of the world were 1,468,811 ha, 18,092 kg/ha and 26,573,001 tons, respectively in 2016; and China produces about 80% of world garlic production. The maximum global record has been registered at 2012 with an average bulb yield of 45,270 tons per hectare belongs to Uzbekistan. The area under cultivation of this plant in Iran is about 9000 hectares with an average yield of 10 tons per hectare. Garlic has been used both as a food flavoring and as a traditional medicine, and these characteristics are affected by sulfur compounds. Alliin (C6H11NO3S) with 177.22 molecule weight is a sulfoxide that is a natural constituent of fresh garlic. It is a derivative of the amino acid cysteine. When fresh garlic is chopped or crushed, the alliinase enzyme, which contains pyridoxal phosphate (PLP), cleaves alliin, generating allysulfenic acid, pyruvate (C3H4O3), and ammonium (NH3). At room temperature two moles of allysulfenic acid as an unstable and highly reactive compound that through a dehydration reaction form one mole of allicin (C6H10OS2) with 162.26 molecule weight, which is responsible for the aroma of fresh garlic. In general, alliinase needs few minutes time to effect on every two molecules of alliin to form one molecule of allicin, two molecules of pyruvate and two molecules of ammonium. The generated allicin is unstable and quickly breaks down, for example during sixteen hours at 23°C it converts to a series of other sulfur-containing compounds such as diallyl disulfide. Allicin is part of a common defense mechanism in garlic plants against pest attacks. It is produced and activated after causing physical injuries. Iranian garlic has a good flavor, while with the exception of Mazand cultivar so far there is no other introduced bred cultivar. In this effort, diversity of agromorphological traits, bulb yield and allicin content of some Iranian landraces were studied to breed promising cultivar/s by single-bulb selection method for Hamedan climatic condition.
Materials and Methods: The experiment was carried out on the basis of a randomized complete block design (RCBD) with four replications in 2015-16 agronomy season at the Agricultural Research, Education and Natural Resources Center of Hamedan Province Located about 6 km north of Hamedan at the altitude of 1740 meters above sea level, longitude 48°, 52̍ E, latitude 34°, 52̍ N. The soil texture of the test site was loam with 24.4, 40.6 and 35 percent of clay, silt and sand, respectively. The soil tillage operation included plowing with the moldboard plow, disc and leveler. The furrow and stack were created with a width of 50 cm. Nine landraces from Hamedan province (Maryanaj, Bahar, Sheverin, Soolan, Toyserkan, Heidareh, Toeen, Hossein Abad and Ali Abad, and other nine ones from Gorgan (Golestan), Oromyeh (West Azarbaijan), Arak (Markazi), Bardsir (Kerman), Amol (Mazandaran), Ramhormoz (Khuzestan), Isfahan (Isfahan), Tarom (Zanjan) and Zabol (Sistan) cultivated on plots having 2 ridges with 4 meters long. Two rows were planted on the ridge with 25 and 10 cm spacing between rows and plants on the row, respectively (40 plant m-2). Bulb planting was carried out on November 17th, and first irrigation was rain-fed on 18th and 19th of November, with 19 and 9.9 mm rain, respectively, and during the fall and winter seasons, all water requirements were met through precipitation. Different landraces germinated from March 12th to March 16th. Pressure irrigation system was installed by re-growing in spring and plants were irrigated every seven to 10 days, depend on air temperature severity, until June 5th. Harvesting of different landraces was carried out by hands from June 26th to July 6th. Evaluated traits for each plot included weight of 30 seed clove, date of germination and maturity, number of plant per plot, chlorophyll a and b and carotenoids content of leaf, chlorophyll index by SPAD, relative water content of leaf, bulb yield, and weight of 30 produced clove, total pyruvic acid, and non-enzymatic pyruvic acid. The evaluated traits for five normal random plants (healthy plants on both sides, and on the opposite side of cultivation lines adjacent to the healthy plant) of each plot were including height, crown diameter, number of leaf, number of fallen leaf, length and width and leaf area, dry weight of plant leaf, dry weight of plant root (to a radius of five centimeters around the bulb) height and width and length of bulb, dry matter of bulb, number of skin layers, number and weight of clove, dry matter percentage. Assessment were also considered based on traits such as, moisture percentage of bulb, leaf area index, sum of chlorophyll a and b, loss weight of cuddle, harvest index, sphericity coefficient of bulb, total number of plant leaf, days number of germination to maturity, enzymatic pyruvic acid and allicin. Traits measurements were done based on "Descriptors for Allium". To measure pyruvic acid, 25 g of cloves with 25 ml of water were completely homogeneous in a mixer and passed through a filter paper after ten minutes. Ten ml of filtrated extract was increased into 100 ml volume with water and a half-milliliter of it was taken and added to 1.5 ml of 5% trichloroacetic acid solution, and after one hour, 18 ml of water was added to sample. Then one ml of resulting solution and each standard solution were transferred to separate test tubes. One ml of water and dinitrophenyl hydrazine 0.0125%, were added to each sample, and were heated in bain-marie bath at 37°C for ten minutes. At the end, by adding five ml of 0.6% normal caustic soda to the test tubes, the concentration of samples were determined in the presence of standard solutions (0.01, 0.225, 0.05, 0.1 and 0.2 μmol / ml sodium pyruvate) at 420 nm wavelength using spectrophotometer Pharmacia-Biotech model Novaspec II. To assess non-enzymatic pyruvate activity, alinase enzyme must become inactivated, so 40 to 60 grams of garlic clove is initially heated in microwave at 900 watts for three seconds for every gram of sample (120 to 180 seconds).
To find relationship between variables, the correlation coefficients between them were calculated. The study of the relationship between traits with bulb yield and alicin yield was done by stepwise regression method. Causal relationships and direct and indirect effects of traits on bulb and allicin were determined by path analysis method. Analysis of variance, mean comparison of traits by LSD method at 1% probability level, correlation determination, stepwise regression analysis and cluster analysis were done by Minitab software version 17.3.1, while Microsoft Word and Excel 2003 softwares were used to draw the graphs and path analysis, respectively.
Results and Discussion: The results shown that Iranian garlic landraces have noticeable diversity of agro-morphological traits, such as weight of 30 seed clove from 21 (Ramhormoz landrace) to 177 g (Hossein Abad landrace), bulb yield from 2059 (Ramhormaoz landrace) to 12090 kg ha-1 (Soolan landrace), Allicin yield from 4.9 (Ramhormoz landrace) to 53 kg ha-1 (Ali Abad landrace), bulb weight from 12.8 (Ramhormoz landrace) to 48 g (Bardsir landrace) and bulb diameter from 28 (Isfahan landrace) to 35 mm (Hossein Abad landrace), which are necessary for breeding programs. It is also confirmed that the adapted landraces from one region may have acceptable production in other regions. According to the present results, landraces from Oromyeh (10866 kg/ha), Arak (9941 kg/ha) and Bardsir (11444kg/ha) produced high yield in Hamedan climatic condition, so that the maximum allicin content were produced by landraces from Ali Abad (53 kg/ha), Maryanaj (51 kg/ha) and Oromyeh (51 kg/ha). Allicin content is calculated based on the bulb yield, and enzymatic pyruvic acid content and its molar relationship with allicin. In the recommended equilibrium of chemical reaction, the alliin coefficient on the one side is two and the coefficients of allicin and pyruvic acid on the other side are two and one, respectively. Bulb weight directly and crown diameter indirectly had highly correlation with bulb yield; and leaf area index, harvest index, bulb diameter and dry weight of plant leaf showed a high correlation with allicin content. The cluster analysis used standardized traits to divide landraces into two main groups as suitable and unsuitable sets to plant under Hamadan climatic conditions.
Conclusion: According to the results of the present study, it is recommended that Oromyeh, Soolan and Heidareh landraces can be used as valuable populations for breeding and introducing the suitable cultivars for Hamedan climatic condition through single-bulb selection method. Characteristics with easy and low cost assessment, such as crown diameter, leaf area index, bulb diameter under field condition; and after harvest measurements, such as bulb weight, harvest index, dry weight of plant leaf traits can also be considered as suitable selection indicators in breeding programs. Thirdly, the current study indicated that the cost of preserving garlic germplasm resources can be decreased by reducing the amount of stored materials, without the significant decline in genetic diversity.
Fatemeh Davoodi; Mehdi Rezaei; Parviz Hidari; Hossein Hokmabadi
Abstract
Introduction: Iran is known as the origin of Persian walnut in the world, and so the study of genetic diversity, identifying and introducing superior walnut genotypes from the main walnut production areas in Iran is very important. From the beginning of the year 2001, seeds of selected walnut genotypes ...
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Introduction: Iran is known as the origin of Persian walnut in the world, and so the study of genetic diversity, identifying and introducing superior walnut genotypes from the main walnut production areas in Iran is very important. From the beginning of the year 2001, seeds of selected walnut genotypes from important walnut production area of Iran were collected and cultivated in a walnut collection in Semnan Research Center (Shahrood), Iran. From this collection, promising walnut genotypes were selected based on climate adaptability to Shahrood area and pomological characteristics. In this research, in addition to introducing fruit characters of these walnut selected genotypes, genetic diversity and their genotypes relationship in the genome level have been also investigated with the ISSR markers.
Materials and Methods: 40 selected genotypes of important walnut regions of Iran (Tuyserkan, Orumieh, Karaj and Khorasan province) were cultivated in a walnut collection at the Shahrood Research Center in 2001. From these seedlings, 21 genotypes were selected on the base of pomological characteristics and they were grafted onto Persian walnut seedlings. Pomological traits of the fruits of these selected genotypes including the average of nut weight, kernel weight, kernel percentage, shell attachment to the kernel, kernel color, shell thickness and nut size and shape were measured. DNA was extracted from young leaves of walnut genotype by CTAB method and its quality and quantity evaluated on the agarose gel as well as the Nano drop, and then genomic DNA was amplified with the 10 ISSR primers in PCR. The amplified bands were separated by Metaphor agarose gel and stained with Ethidium bromide. For each primer, the amplified band range, the total number of bands, the number of polymorphic bands, the polymorphic percentage, Average informative band (AvIb) and resolving power (Rp) was determined. UPGMA dendrogram based on Jaccard similarity matrix was the performance by Ntsys 2.0 software. Principle Coordinate analysis was performed based on the genetic distance matrix with GenAlex 6.2 software.
Results and Discussion: The mean of fruit and kernel weight in selected walnut genotypes were 14.34 and 7.33 g, respectively. The highest nut and kernel weight was found to be 17.5 and 10.3 g, respectively in OR23. The Kernel weight was more than kernel weight reported by Shamlu et al. (2015), Yarilgak et al. (2001) and Tasmuris et al. (2002) (9.40, 8.88 and 6.32 g). The average of kernel percentage in selected walnuts was 51.5%. The highest percentage of the kernel (62.7%) was observed in T12 genotype. from the ten ISSR primers in 21 walnut genotypes, 112 DNA fragments were amplified and 102 DNA bonds of them were polymorphic and they were used for genetic variation analysis. The highest number of amplified DNA bands was observed in UBC826 and UBC888 primers with 14 bands. The highest average band informative (AvIb), 0.62, was observed in UBC887 and UBC886 primers. The highest resolving power (Rp) was found to be 7.71 in UBC826 primer and then in UBC.887 primer. The Jaccard' similarity coefficient of genotypes varies from 0.51 to 0.88. The results showed that the genetic distance of selected genotypes of walnut is medium. The dendrogram analysis of 21 genotypes of walnuts was divided genotypes into two main groups and three subgroups in the first group, which greatly matched the results of the PCoA. The genotypes were collected from Shahrood were inserted on the first subgroup of GI in dendrogram analysis, except of KH4 and OR37 genotypes, and the highest genetic similarity was observed between some of these genotypes (R1G2 with R2G1 and R1G7). The second group includes genotypes KH34, OR26, and SH1. Subgroup 3 of the first group contains R2G8, K26, OR23, T12, and K28. The second group has high genetic distances including R2G4, KH31, T1, OR4, and T9.
Conclusion: The ISSR marker technology is an inexpensive, easy and satisfactory way to evaluate genetic relationships and genetic variation among walnut cultivars. The results of this research showed that these markers (ISSR) are suitable for study of variation in walnut genotypes. The genotypes collected from Shahrood had a lower genetic diversity, and the observed diversity is probably related to human interactions. The Tuyserkan and Urmia genotypes showed more genetic variation. The results of clustering based on molecular markers were largely matched with the grouping based on qualitative traits. The results showed that there is a moderate genetic distance between selected walnuts genotypes. The genotypes collected from Urmia and Tuyserkan regions have a higher genetic distance than other genotypes and which according to their superior characteristics, they can be used as parent along with selected walnut genotypes from the Shahrood area in a breeding program.
Hajar Shayesteh; Saeid Malekzadeh Shafaroudi; Kamal Ghous; Farajolhah Shahriari
Abstract
Introduction Jujube (Zizyphus jujuba Mill.) as a valuable medicinal plant and adapted to different climatic conditions is widespread in many parts of Iran. Nowadays, beside the export of its fruit, jujube is also used as an herbal medicine to treat the diseases, so it has a high economic value. Study ...
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Introduction Jujube (Zizyphus jujuba Mill.) as a valuable medicinal plant and adapted to different climatic conditions is widespread in many parts of Iran. Nowadays, beside the export of its fruit, jujube is also used as an herbal medicine to treat the diseases, so it has a high economic value. Study on genetic diversity is the first step to identify and preservation of germplasm. It is also considered as the basic principles of plant breeding. DNA markers seem to be the best way in determination of the genetic diversity. Inter simple sequence repeats (ISSR) markers are highly polymorphic and combine most benefits of Simple Sequence Repeats (SSRs) and amplified fragment length polymorphism (AFLP) to the generality of random amplified polymorphic DNA (RAPD).
Materials and Methods In order to study of the genetic diversity among 31 ecotypes collected from eight Jujube-rich provinces, including South Khorasan, Razavi Khorasan, Mazandaran, Golestan, Qom, Isfahan, Lorestan and Fars. Genomic DNA was extracted by CTAB method and polymerase chain reaction (PCR) was performed with 13 ISSR primers in which six most efficient primers were selected. Cluster analysis based on Dice similarity coefficient and Unweighed Pair Group Method with Arithmetic Mean (UPGMA) was carried out and POPGENe.3.2 software was used to determine the similarity of populations with each other.
Results and Discussion 84 loci were amplified and 70 of them (83%) revealed a proper polymorphism with the size between 200 and 2000 base pair. The average number of amplified and polymorphic bands per primer was 14 and 11.6 respectively. Primers with di-nucleotide repeats produced more polymorphic bands than ones with tri-nucleotide repeats. It seems that this is due to a higher frequency of sequences containing di-nucleotide repeats in intergenic regions and higher possibility of mutation revealed in more diversity in comparison to gene coding regions. Anchored primers with 1 or 2 nucleotides at the 5’ end make sure annealing only to the ends of SSRs in template DNA, so avoiding internal priming and smear formation. In addition, the anchor lets only a subset of the microsatellites to serve as priming sites. Primers (AC)8YT and (GA)8A with the higher percentage of polymorphism is recommended for further analysis. According to the cluster analysis, the ecotypes could be classified into seven main groups at the 0.85 level of genetic similarity. The most genetic similarity (0.95) was observed between ecotypes from Kalaleh and Doroh and also Noghab and Dustiran and the least genetic similarity (0.48) observed between Kangan and Borzaderan. POPGENe.3.2 software data indicated that populations of Isfahan and South Khorasan had the slightest difference while populations of Isfahan and Razavi Khorasan showed the most difference.
Conclusions In general results demonstrated that the total diversity of jujube ecotypes in Iran is summarized in the area of South Khorasan province. Given data showed that South Khorasan has been an original place of cultivation of this medicinal plant, this area could be considered as one of the important centers of jujube diversity. In addition, significant levels of diversity were observed among ecotypes belonging to Isfahan and Mazandaran provinces.
Shadab Faramarzi; Abbas Yadollahi; Ghasem Karimzadeh
Abstract
Introduction: Apple (Malus Miller) belongs to Rosacease family and the subfamily of Pomoideae. This fruit is at first place among fruits of temperate zones. The cultivated apple (Malus × domestica Borkh.) is a complex hybrid of the apple species. Chromosomal basis of this subfamily are x = 17 and the ...
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Introduction: Apple (Malus Miller) belongs to Rosacease family and the subfamily of Pomoideae. This fruit is at first place among fruits of temperate zones. The cultivated apple (Malus × domestica Borkh.) is a complex hybrid of the apple species. Chromosomal basis of this subfamily are x = 17 and the ploidy levels have been reported for diploid (2n=2x = 34), triploid (2n =3x= 51) and tetraploid (2n= 4x= 68). Since Iran is close to the apple diversity region (Central Asia), it has a good variation of apple varieties. Despite the high levels of variation in apple cultivars and species in Iran, there is not still a database of genome size. Classification of plants according to their genome size, especially at lower taxonomic levels is important for breeders. Over the past years, several methods for estimation of nuclear DNA content (genome size) was common, but recently, the use of flow cytometry (FCM) has been increasingly used. Flow cytometry is the best method to estimate DNA c-value and ploidy levels in apples. In this study, DNA c-Value and ploidy level of Iranian apple varieties has been estimated by flow cytometry and propidum iodide staining.
Materials and Methods: Fully expanded young leaves of all apple varieties were collected in the summer 2013. Nuclear extraction was performed using Partec kit as following: 1 cm2 apple leaf and 1 cm2 parsley leaf (as internal standard) were co-chopped with razor blade after adding 500 µl of nuclear extraction buffer. Then, the extract was filtered by two kind of filters (50 and 30 um). One ml of staining buffer, 4 µl of RNAase and 4 µl ofpropidium iodide was added for 15 min at room temperature. Finally, nuclei were counted using flow cytometry (BD FACSCanto II, USA) at Tarbiat Modarres University. The genome size was estimated according to bellow formula:
DNA 2C-value sample =
Also, given the high levels of phenolic compounds in apples, treating with PVP and PVP 1% were performed to evaluate the effect of phenolic compounds on estimation of genome size. Finally, Histogram analysis and DNA c-value estimation were done with Partec Flow Max software. The difference between means was obtained by SAS software ver. 9.2 and LSD tests.
Results and Discussion: The results showed that genome size obtained from Partec Flow Max software and ranged from 1.57 pg for ‘Golab- Bastam’ to 1.73 pg for ‘Golab- Kermanshah’. Histogram analysis was demonstrated that all studied cultivars are diploid. The average genome size in this study was 1.62 pg. Research conducted on foreign apple varieties have showed that the genome size of diploid species from was obtained 1.45 for M. fusca to1.68 pg for M. ransitoria. The genome size for triploid species was ranged from 2.37 to 2.57 pg. In this study, genome size was calculated in terms of mega base pairs and was different from 748 Mbp in ‘Golab- Bastam’ to 846 Mbp in ‘Golab- Kermanshah’. Thus, the size of the genome was closed to M. ransitoria (1.68 pg). This species is native to China, which is a Crab apple and used as an ornamental tree. It has been reported that Iranian apple are M. domestica Borkh. In another study, genome size was identified in the range from1.245 pg for diploid species of M. tschonoskii to 1.653 pg for M. florentina. M. florentina species is native to Balkans and Italy, that is an ornamental tree and its genome size is close to M. domestica Borkh. (1.653 pg).
Conclusion: Classification of plants according to their genome size seems to be important, especially at lower taxonomic. Genome size, even in very close species can also be different, for example, northern corn with more heterochromatin has larger genomes than those who are located in south (less heterochromatin). This study appears the variation of DNA 2C-value in Golab cultivars, even though Golab cultivars are known clones with low genetic diversity. Therefore, it is likely that Iranian apple varieties, with the same ploidy level, have been had difference in genome size. There are various ploidy level in apple, including diploid (2n = 34), triploid (2n = 51), tetraploid (2n = 68) and hexaploid (2n = 102). Thus, it is expected that current apple M. × domestica Borkh., have been contributed some several species such as M. prunifolia (Willd.) Borkh., M. baccata (L.) Borkh., M. sieboldii (Regel) Rehder, M. sylvestris, ،M. orientalis Uglitzk and M. sieversii.
Fatemeh Shamlo; Mehdi Rezaei; Abbas Biabani; Ali Reza Khanahmadi
Abstract
Introduction: Persian walnut (Juglans regia L.), a monoecious tree with a long history of cultivation in Middle East and Europe, is currently one of the major nut crops in Iran. Since Iran is known to be one of walnut origins, a high genetic diversity can be found in this area. Almost all traditional ...
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Introduction: Persian walnut (Juglans regia L.), a monoecious tree with a long history of cultivation in Middle East and Europe, is currently one of the major nut crops in Iran. Since Iran is known to be one of walnut origins, a high genetic diversity can be found in this area. Almost all traditional commercial walnut orchards in Iran propagated by seed, therefore these orchards are rich in genetic resources. Morphological studies on the basis of pomological traits can be used for assessment of genetic variability in fruit trees, as well as for selection superior genotypes. Some researchers studied walnut genetic diversity in several areas of Iran but not in Azadshahr region, an area located in north and north-eastern of Iran with high walnut production. As walnut is highly diverse due to open-pollination system and seed propagation, we intend to study genetic diversity of Azadshar walnut genotypes by using morphological and pomological traits.
Materials and Methods: This research was conducted in Azadshare, Golestan province, Iran in 2012. Considering walnut orchards distribution, distance and height above sea level, four areas, namely Vamenan, Kashidar, Roodbar and Sidabad, with the distance of 15 Km apart were selected. Based on tree density and distribution, 15 to 40 trees in each area were labeled, and 102 walnut genotypes were generally evaluated. In each genotype, 30 morphological characteristics related to fruit, leaf and tree-growing habit were studied by using IPGRI walnut descriptor with a few modifications. Data analysis was performed by SPSS 16 software. Correlation coefficient of quantitative and qualitative characteristics was performed by using Pearson and Spearman methods, respectively. Cluster analysis was also performed by Ward method.
Results and Discussion: The results of anatomical characteristics analysis showed that genotypes of this area have high diversity in some pomological traits such as kernel percentage, nut weight, kernel color, easy separation of kernel. Based on the results, genotypes Ka17 and Va31 had the highest average of nut weight (19.79 gr). Va31 genotype had the heaviest kernel (9.4 gr). SID1 genotype had the highest kernel percentage (60.34%). Moreover, e genotypes ROOD4 and Va34 were typified by easy removal of kernel halves (very easy) and fruit flavor desirability (desirable). 26.47% of the genotypes showed very easy separation of kernel from shell. Correlation analysis showed that there was significant correlation among some traits. Fruit weight had high positive correlation with fruit length and diameter, and kernel and shell weight. There was no significant correlation among kernel shape, easy separation of kernel and shell tissue. As the results of cluster analysis of walnut genotypes indicated, clustering of genotypes is mostly similar to collected region and genotypes separated to four main groups in 12.5 distances of 25 in cluster figure. Most walnut genotypes of Vamenan and Kashidat regions, with the exception of ROOD 11 and ROOD 4, were placed in the first and second clusters similar to their geographical distribution. These areas have been the closest to the geographical distance and the height above sea level is not much different from each other. Almost all the genotypes collected from Sidabad region were placed in the third cluster. Sidabad village has high geographical distance from other studied regions, with its elevation is being significantly different from other areas., The majority of Roodbar genotypes, some genotypes of Vamenan and Kashidar, and one genotype of Sidabad (SID4) formed the fourth cluster. Roodbar region was located geographically between Sidabad and Vamenan regions. It has the same elevation as Vamenan and Kashidar have. In general, nut, kernel and leaf characteristics had the major role in clustering of genotypes.
Conclusion: Large genetic diversity in Azadshar walnut genotypes as inferred from morphological markers is advantageous to crop improvement through breeding and selection. Clustering analysis by morphological markers could clearly separate Sidabad walnut genotypes from other populations which have a good similarity with their geographical distribution. According to the results of this study, walnut genotypes collected from Azadshahr region showed a high genetic variation that can be used in breeding programs. Clustering based on morphological characteristics can be an effective method to determine the relationship between genotypes, as well as their relative distance.
Roghayyeh Najafzadeh; Kazem Arzani; Alireza Babaei
Abstract
Abstract
Considering to importance and high genetic diversity of Pear (Pyrus communis L.) in Iran, a study was conducted on the effect of genotype on fruit physicochemical properties and qualitative characteristics of six mature European Pear genotypes in Teheran, Iran environmental conditions. In this ...
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Abstract
Considering to importance and high genetic diversity of Pear (Pyrus communis L.) in Iran, a study was conducted on the effect of genotype on fruit physicochemical properties and qualitative characteristics of six mature European Pear genotypes in Teheran, Iran environmental conditions. In this study some physicochemical fruit properties and qualitative characteristics such as: fruit length, width, length to width ratio, fruit pedicel length, fruit color, fruit fresh and dry weight, fruit volume, fruit firmness, total soluble solids (TSS), titratable acidity (TA), pH and sensory evaluate were monitored based on the descriptors of International Plant Genetic Resources Institute (IPGRI). Results showed significant differences within the studied genotypes in the most fruit characters (P ≤0.05). In addition, it was a diversity within the measured characters in fruit length (ranged from 6.99 to 9.82 cm), fruit width (4.69 to 7.17 cm), fruit length to width ratio (1.23 to 1.59), fruit pedicel length (2.2 to 3.73 cm), fruit color (yellow to yellowish green and green to red with L* value 60.47 to 74.08 and H* value 80.06 to 86.95 and C* value 46.16 to 53.43), fruit fresh weight (80.5 to 308.9 g), fruit dry weight (4.52 to 5.36 g), fruit volume (86.33 to 270.7 cm3), fruit firmness (1 to 2.37 Kg/cm2), TSS (14.9 to 17.63 οBrix), TA (0.18 to 0.41 % malic acid), TSS/TA (40.49 to 92.66) and pH (3.95 to 5.33). Results revealed that genotype A95 had better quality and physicochemical properties and qualitative characteristics than other genotypes which can be considered as promising genotype for further evaluations.
